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Zotero is free bibliographic software that allows you to easily collect, annotate, and cite bibliographic data. It runs as a plugin for the excellent Firefox browser, which means that you have the web at your fingertips as kyou manage information, and also that it can run on any operating system that Firefox can run on (that is, all of them). It is also open-source, which means that anyone can improve it and develop for it. It is a great alternative to more expensive software, and also has a number of advantages over its more wealthy brethren.

This is a guide to using Zotero effectively in biblical studies, though using Zotero effectively in biblical studies is usually similar to using Zotero effectively in other fields. I will add a couple of remarks along the way, however, especially for those of us in theological fields.

Step 1: Installing Zotero

Your first step in using Zotero is getting everything installed. If you are not already running Firefox (an excellent open-source web-browser), then shame on you. Install that by following the easy steps here.

Installing Zotero

Open up Firefox and browse to the Zotero site (here). Click on “try out 2.0 beta.” It might seem at first that 1.0 is the better option, but there are SO many new features with 2.0 that it’s really the way to go. I use Zotero daily and have had no major issues with 2.0. The rest of the guide will assume that you are running that version.

Once you click, Firefox will do the rest—download, install, and ask you to restart. Restart Firfox and you are ready to go.

The Zotero website is also a great place for guides and videos, so browse around a bit.

Step 2: Move Your Zotero Directory

The VERY FIRST thing you need to do with your new Zotero setup is change the location where it stores all its data. By default Zotero puts all the information you want it to remember in the same place where all your Firefox settings are stored. This is terrible. It’s like storing your valuables in something that looks exactly like a trash can—someone will eventually forget it’s not a trashcan and throw it away. You’ll either upgrade Firefox, or Windows, or something, and then it will be gone (and backup software may not know to back up this directory). So let’s move it. (Note: if you already have data in your Zotero directory, back it up first using Zotero’s export command. When you move your directory in Zotero it will seem like your data is gone, but it isn’t. It’s still in the old directory. Either move it manually or import the data you just exported).

Create a New Folder. Open up your file browser and go to a directory where you keep important data. Something like “My Documents” in Windows—you know, where you save documents. Hopefully it is also a directory that gets backed-up by your backup software. In that directory create a new (empty) directory called “Zotero.” (For an always-on backup solution that super-secures your data, you may want to put Zotero in a Dropbox directory; see “Securing Zotero” below).

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data directory

Tell Zotero what to do. Now in Firefox you will now notice an icon in the bottom right corner that says “Zotero” (labeled “1″ in the picture to the right). Click on that to get your Zotero window up. Then look for a gear icon (“2″ in the picture), which you should click, and select “Preferences.” We’re going straight to the “advanced” tab (“1″ in the second picture), then clicking the “Custom” option (2), and then clicking “choose” (3). Select the directory you created and click ”

Step 3: Get Some Data

Alrighty, now that we know our data isn’t going anywhere, let’s get some actual data. You can add books and articles and what not manually, but that is SO 2008. One of the great things about Zotero is that it sits in your web browser, so you can use the web to get data for you. A number of popular sites (Amazon, Google books, etc) support Zotero data. Chances are your school library does as well. Let’s start with Amazon, though. Go here. Now look at the address bar. There should be a little folder icon there. If you click on that, it will bring up all the books on the current page, from which you can select which to add to Zotero. Now go here. Just one book this time, and the Zotero icon in the address bar is now a book. Click on it and it will add the bibliographic data to your database.

A lot of blogs also support Zotero, including this one. See the icon in the address bar when you go to nerdlets.org? That means you can add blog entries straight into your Zotero database.

zotero bar

Play around for a bit. Try Google books. Or the library of congress. Or your favorite library site. Also notice the various icons in the middle section of your Zotero interface. These all allow you to add a variety of things to Zotero, from webpage snapshots, to manual data for books that are not on your preferred website, to files on your computer.

Step 4: Using Zotero with your Word Processor

Install Word Processor Plugins. Now that you have some data you probably want to use it. Zotero has a number of plugins that integrate with your favorite word processor. You can find out more about those here, and the install page is here. Make sure you scroll down for the 2.0 plugins; the 1.0 plugins will not work. The plugins install just like Zotero itself, as browser add-ins. The plugins update automatically, and automatically install all the needed files into your word-processor. Easy. There is one for Microsoft Word (here) and for OpenOffice (here).

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Format your citations in the correct style. Now Zotero will work with your word processor, adding data into footnotes as needed, and all in the proper format. Speaking of proper format, you may want to add bibliographic styles not included by default. For theology or church history you’ll probably want to use what Zotero calls “Chicago Manual of Style (Full Note with Bibliography),” which is included by default. For biblical studies you’ll probably want the SBL style, which is not installed by default, but fear not! Because Zotero is open source anyone can create their own style, and a number of users have done just that. Most likely your preferred style is out there somewhere. Let’s install the SBL Style as an example. Go to Zotero preferences and click on the “Styles” tab. Then click on “Get additional styles…” This will take you to a webpage with a whole list of styles; just click “install” to add it to Zotero. The SBL style guide is in that list, or you can install that by clicking here.

Back in the preferences dialog click on the “Export” tab. Select the style you prefer in the “Default Output Format” box.

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Cite, my friend, cite! Now open up your favorite word processor. I’m using OpenOffice, but the process is the same for Word. You should notice a new toolbar. If you don’t see it, go to “View” and “Toolbars” and look for one that says Zotero. Once you find it, hover over each button to see what they do.

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Let’s assume you want to add a citation that is SBL compliant. Create a footnote. Now add a citation (“1″ in the picture). If this is the first Zotero citation you have added a window will pop up asking about how you want to format this document. Make sure SBL is selected and click OK. You will notice that a field has been added to your footnote (2), and a new dialog window has popped up (3). Now search for a citation you want to add, either by browsing through folders or by using the search dialog (4). Select your citation (5), and add page numbers (6). You can also choose “Multiple Citations” if necessary (7). When you’re done click OK (8).

Once you are done with your document you can automatically generate a bibliography (3rd button). You can edit citations with the second button. Have fun!

Step 5: Helpful Hints and Best Practices

Zotero is pretty powerful software, but you have probably already encountered some problems. Here are a few tips on how to use Zotero effectively.

  1. Use folders sparingly, use tags generously. Folders are a great way of organizing information, provided you don’t have too many and the hierarchy doesn’t go too deep. I create folders for each major topic that I am studying. Every paper I write or class I teach gets a folder. This allows me to have a kind of record of research. But if you get to specific this can get unwieldy. Instead, use tags for the specifics. Tags are search-able and non-hierarchical. You can add as many as you want and it won’t junk up your database.
  2. Every paper your write gets its own folder. Again, this allows you to retain a record of research. Anything you cite in a paper goes in that folder.
  3. Stick to a standardized naming scheme for authors and publishers. One of the major problems with Zotero is that it does not store author and publisher names in a hierarchy. So if you add Calvin’s Institutes under “Calvin, J.” and then later one of his commentaries under “Calvin, John,” Zotero will think it is two different authors, which will mess up your bibliography. Rather than making lots of piddly changes down the road, stick to a standardized naming scheme now. Make it work with whatever bibliographic style you are using. For authors I stick to last name and 1-2 initials. For publishers I always exclude the words “Publishing” or “Press” unless its a university (“Oxford University Press”). If the book contains a number of articles, I always have a separate entry for the book as a whole, then “copies” of that entry for various articles. Find a system that works for you and stick with it.
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  5. Always type out quotes you want to use in Zotero first, then copy and paste into your article. I like to do research “on the fly”; that is, I like to research as I write, and write as I research. This means that my papers are always in process. It also could mean that my research is less easily reusable. In order to find that quote I need to find that paper in which I typed it out. To avoid this, type out all quotes as notes in Zotero. Right click on the book from which the quote is taken and select “Add note.” On the top line type two or so words that identify the topic of the quotes (think: “how will I search for this in two years”) and the page number. Then type out the quote (Zotero has a handy “quote” style), then any comments you might have. Notes like this will always be associated with their respective books, no matter where you drag and drop that book, and notes can be tagged like anything else.

Step 7: Syncing Zotero

The latest version of Zotero allows you to sync multiple databases, and also sync online. To set that up, follow the directions here. That will allow you to sync your data. To sync files—like all those PDFs you have saved—things get more complicated, but all is explained in the aforementioned link.

Please remember, though, that SYNC does not mean BACKUP. Sync means that everything you do is synced between multiple computers. If you do something idiotic, your idiocy will then be replicated 10 fold. A mirror doesn’t make your face any less dirty. You still need a backup, so keep reading.

Step 8: Securing your Life’s Work

I now use Zotero as my bibliographic database, as a document library for all my PDFs, as a web bookmarking database, a recipe book, an interview manager, and a job-search tool. If it fails, I’m sunk. You need to back up your Zotero database. How do you do that?

Zotero is just a collection of files. Place your Zotero directory somewhere that gets backed up every day, like your My Documents folder (see above for how to do this). Better yet, use Dropbox. Dropbox is an application that you can install that creates a folder, and then automatically backs-up and syncs any data you put into it. Dropbox is free, works on any OS, and provides you with 2gb of storage. You can install it by going here. Once you have your dropbox folder up and running, move your Zotero folder into it.

You should also have a local backup. That is, every night your computer should back up all important data onto a separate hard disk. By an external harddrive (newegg.com) and backup your data to it daily (using something like the free version of syncback.

Conclusion

When your research is searchable, re-usable, and secure, life is good.

 

In honor of the release of OpenOffice 3.0 I thought I would make it my first post in the Don’t Pay for Software Series.

What is OpenOffice.org?

It is an office document suite, similar to (but better and free-er than) Microsoft Office or (for those of you who still use it) WordPerfect. Now don’t be nervous because it is free; there are good reasons to choose free software. It’s not free because it sucks, its free because it’s managed by a community of dedicated enthusiasts. The company that finances these enthusiasts makes money selling services and hardware, not software; the software is merely a means to an end, which means you get to have all the benefits of a professional grade office suite without all the cost.

Why OpenOffice.org?

What if you already have Microsoft Office? Are there any benefits to OpenOffice not available from the mainstream flagship office suite? I’m glad you asked. There are several. First, it’s free. Now this may not matter to you now, since you already have shelled out the money for MS Office, but what about when it comes time to upgrade? That time will come, you know, and before you know it. Then you will have to shell out that money all over again for what usually amounts to only a slight improvement over the original.

There are other advantages as well. Ever try to send a document to someone only to find they could not read it? Maybe they were not willing to pay all that money for Word, and now you have to convert it for them. This is all because Microsoft has a history of not supporting standards. That is changing, but it has not changed yet, so all your data is saved in a format that only Microsoft’s products can read. OpenOffice.org, by contrast, can read all your old MS Office files, but by default saves all of its information in “OpenDocument” formats. The code for these formats is made public, so any program can theoretically access them. Also, OpenOffice can automatically export all your documents as PDFs.

This is the main advantage that OpenOffice has over MS, but I would like to reiterate: in addition to this advantage, OpenOffice does almost everything else MS Office can do, and much of it can be done more easily!

What’s New in OpenOffice 3.0

Well, lots of things. Read about all of them here.

There are four features that I am especially excited about.

First, the new Welcome Screen. Aesthetics matter, and here MS Office has us beat hands down. But the Welcome Screen helps, and it also allows for easier document creation and template management. And with Windows at least, you also get a handy little quick-launch button in your taskbar.

Second, better document editing and commenting in Writer. This feature really helps OpenOffice compete with MS Word. Previously these features were pretty primitive, but now OpenOffice supports multiple editors (each editor gets a different color) and true comment display in the sidebar. This is really a plus in my book.

Third: a new, intuitive, and hugely important extension manager, similar to that implemented by Firefox. Extensions are were Open Source software really shines. Because the code is not secret, anybody can look at it and, if they’re good enough, improve upon it. Rather than add all these improvements into the original program, it is much easier, much faster (the powers that be have to approve any code changes to the base system), and much safer to provide those improvements through easily managed extensions. OpenOffice.org makes this process easy, with a dedicated extension manager that allows the user to easily search for, add, and remove functionality at will. My favorite extension so far is Zotero Integration, which allows you to automatically generate formatted citations and bibliographies in your documents. Another handy extension is the PDF Import Extension, which allows you to directly edit PDF files.

Finally, OpenOffice Impress (the equivalent of PowerPoint) is now ready for prime time. With dedicated table creation and other new features, this component of the suite is finally competitive. There is also a new extension available that allows you to use Impress with two screens, one for them, the other with notes and other helps specifically for your. Read about that here.

For a full review of OpenOffice.org, with some attention given to the Mac version, check out this post.

Alternatives

There are several Web based alternatives to OpenOffice. Google docs is the most obvious, but also check at the Zoho suite of products. These are both free. The best thing about these products is that they offer you access to your documents anywhere in the world. All you need is an internet connection; no software required. Also, both offer real-time collaboration, so you and a colleague can work on the same document at the same time and both see what the other is doing; all changes are saved and completely undo-able. Nice. Aside from these features, though, they are not yet as feature-rich as their desktop alternatives.

The other alternative I will mention is IBM’s Lotus Symphony. This Office Suite is based off of OpenOffice, actually, but an older version (the 1.0 series). It bundles that older version with a set of IBM tools for document management and collaboration. In general, however, I have found it less stable and feature-full than the “vanilla” OpenOffice, and it does not import Microsoft documents as accurately.

Disadvantages

The main disadvantage with OpenOffice is the lack of any email/productivity manager, such as Microsoft’s Outlook. This is actually not a huge problem since Mozilla’s Thunderbird will do the job quite nicely. Add the Calendar Extension and you have everything Outlook has to offer (combine it with Gmail and Remember the Milk, and you have an always-in-sync online version as well). A full post on this is coming soon.

Conclusion

So I would suggest giving OpenOffice.org a try. You have nothing to loose. Their main page is here. Versions are available for every operating system (Windows, Mac, Linux).

 

From their blog:

As the launch of Zotero 1.5 approaches we are excited to announce the availability of specific bibliographic styles for more than 1100 journals. Zotero now supports such diverse publications as French Historical Studies, the American Sociological Review, Accounts of Chemical Research, the Chinese Journal of Clinical Oncology, the British Medical Journal, American Political Science Review, and Oxford German Studies. We also remind Zotero users that most other publications are already supported through our generic styles.

Many of these styles require the Zotero 1.5 Sync Preview release.

You can find additional styles here. To install the Society of Biblical Literature Style go here.

 

Zotero is releasing a second beta version of their upcoming 1.5 edition. The biggest enhancement for 1.5, introduced in the first preview release, is the ability to sync Zotero information between computers.

The second preview adds attached files to that functionality, but only if you have a WebDAV account (or server).Unless someone is providing you with a WebDAV service (iDisk, online storage, etc), WebDAV is not the easiest of protocols to set up.

Another, perhaps more important, new feature is the ability to automatically download (from Google Scholar, I think) PDF metadata. This is yet another way Zotero makes organizing and locating files easier. If you have a stack of PDFs on your computer, many of which probably have non-descriptive filenames, this feature is for you. You can see this feature in action here.

A more thorough list of features, and a download link, can be found here.

 

For those who use the excellent bibliographical software Zotero, a major milestone is in the works. The 1.5 release will support, among other features, keeping a full copy of your bibliographic database, which can be accessed by and synced with any of your computers, regardless of Operating System.

The latest release is still in development, and should be used with caution, but a preview candidate has nevertheless been submitted to the public for testing. If your are interested in trying out the new features, check out their announcement. Also, this release requires Firefox 3. Those who prefer the stable version should stick with Zotero 1.0.

Not familiar with Zotero? Check out my previous post, which introduces the software and shows you how to add JBL’s bibliographic style to the mix.

 

The much anticipated release of the excellent web browser Firefox 3.0 is available for download. Curious what all the fuss is about? Wondering if you should switch from Internet Explorer (you should, by the way)? Check out the discussion here and here for the best Firefox analysis. Wondering what’s new? Check out this list or a more in depth visual tour.

Convinced? Help Mozilla (the organization behind Firefox) set a record for most downloads in a day by downloading now! Once you have your very own copy, you can start adding extensions and customizing to your heart’s content.

In honor of this milestone in Web development, I thought I would provide some of my favorite extensions. Check them out!

Zotero of course. I have already posted a brief introduction. If you do any amount of research, Zotero is a must for organizing bibliographical material. It also generates citations in a variety of formats, including Chicago and SBL. If you are having trouble getting start, make sure you check out their online screencast, and I plan on developing my own tutorial for SBL/OpenOffice support in the near future.

Ever wish you could access your most-used internet bookmarks anywhere? Or maybe you want to share them with friends and family? Or post automatically generated links to your favorite posts on a blog (as I have in the sidebar to the right)? Well then del.icio.us is for you. The interface takes a little getting used to, and the website has the kind of interface only a techie could love, but its worth the effort. More to the point, it has a brilliant Firefox Extension.

If you’re a longtime use of Firefox, you probably already have a collection of favorite extensions. Some of them might not yet be updated for Firefox 3. Don’t worry, you can still use them: just download Nightly Tester Tools to override Firefox’s default functionality.

Gmail is wonderful, but it is even more wonderful when you install Better Gmail 2, which adds some customizable functionality to gmail’s site.

If you’re a blogger, you definitely want to check out Scribefire. Like Zotero, it runs inside Firefox, allowing you to browse and blog at the same time; no more switching tabs and juggling windows!

Well that’s enough to get you started. I would love to hear what everyone else finds helpful. Post your ideas in the comments!

 

If you have not already downloaded Zotero, the free, open source bibliographical reference manager for Firefox, now would be a good time. It now supports the cutting edge Firefox 3, and, for all those interested in writing papers in biblical studies, there is now an extension that produces SBL-compliant citations and bibliographies.

Installation is easy enough. You will need to have Firefox installed (either link above will guide you, but I recommend Firefox 3 RC1, as it is pretty stable and supports a lot of great features). Once you have firefox up and running, follow this link and click of “Download.” Firefox should do the rest. You will need to restart firefox to get started–you should see the Zotero icon in the bottom right corner. Click on it to play around!

To install SBL support, Click Here in Firefox and let Zotero do the rest. You will need to restart your browser for the changes to take affect.

Zotero takes a little practice. You can manually type in entries or download them by clicking on the little book icon in your browser’s address bar on cites such as Amazon.com or The Westminster Library. Once you have some entries, try creating a citation or bibliography. First, go to “Preferences” (an option under the gear icon in the main bar). Click on the “Export” tab and select SBL as your “Default Output Format.”

To create a citation, click on the entries you want to cite. Use the keyboard shortcut a to create a citation in your Clipboard, which you can then “Paste” into any document editor. To create a bibliography, select the desired entries, right click on one of them, and choose “Create Bibliography from Selected Items.” Follow the instructions. Paste wherever you see fit.

There is also a plugin for Microsoft Word that integrates the Zotero interface into your document editor. Usage instructions are provided in the previous link. For those more dedicated to open-source software, there is also an openoffice.org version available.

I hope to publish a full guide to using Zotero in a week or so–complete with Screencasts.

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