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Zotero is free bibliographic software that allows you to easily collect, annotate, and cite bibliographic data. It runs as a plugin for the excellent Firefox browser, which means that you have the web at your fingertips as kyou manage information, and also that it can run on any operating system that Firefox can run on (that is, all of them). It is also open-source, which means that anyone can improve it and develop for it. It is a great alternative to more expensive software, and also has a number of advantages over its more wealthy brethren.

This is a guide to using Zotero effectively in biblical studies, though using Zotero effectively in biblical studies is usually similar to using Zotero effectively in other fields. I will add a couple of remarks along the way, however, especially for those of us in theological fields.

Step 1: Installing Zotero

Your first step in using Zotero is getting everything installed. If you are not already running Firefox (an excellent open-source web-browser), then shame on you. Install that by following the easy steps here.

Installing Zotero

Open up Firefox and browse to the Zotero site (here). Click on “try out 2.0 beta.” It might seem at first that 1.0 is the better option, but there are SO many new features with 2.0 that it’s really the way to go. I use Zotero daily and have had no major issues with 2.0. The rest of the guide will assume that you are running that version.

Once you click, Firefox will do the rest—download, install, and ask you to restart. Restart Firfox and you are ready to go.

The Zotero website is also a great place for guides and videos, so browse around a bit.

Step 2: Move Your Zotero Directory

The VERY FIRST thing you need to do with your new Zotero setup is change the location where it stores all its data. By default Zotero puts all the information you want it to remember in the same place where all your Firefox settings are stored. This is terrible. It’s like storing your valuables in something that looks exactly like a trash can—someone will eventually forget it’s not a trashcan and throw it away. You’ll either upgrade Firefox, or Windows, or something, and then it will be gone (and backup software may not know to back up this directory). So let’s move it. (Note: if you already have data in your Zotero directory, back it up first using Zotero’s export command. When you move your directory in Zotero it will seem like your data is gone, but it isn’t. It’s still in the old directory. Either move it manually or import the data you just exported).

Create a New Folder. Open up your file browser and go to a directory where you keep important data. Something like “My Documents” in Windows—you know, where you save documents. Hopefully it is also a directory that gets backed-up by your backup software. In that directory create a new (empty) directory called “Zotero.” (For an always-on backup solution that super-secures your data, you may want to put Zotero in a Dropbox directory; see “Securing Zotero” below).

zotero window
data directory

Tell Zotero what to do. Now in Firefox you will now notice an icon in the bottom right corner that says “Zotero” (labeled “1″ in the picture to the right). Click on that to get your Zotero window up. Then look for a gear icon (“2″ in the picture), which you should click, and select “Preferences.” We’re going straight to the “advanced” tab (“1″ in the second picture), then clicking the “Custom” option (2), and then clicking “choose” (3). Select the directory you created and click ”

Step 3: Get Some Data

Alrighty, now that we know our data isn’t going anywhere, let’s get some actual data. You can add books and articles and what not manually, but that is SO 2008. One of the great things about Zotero is that it sits in your web browser, so you can use the web to get data for you. A number of popular sites (Amazon, Google books, etc) support Zotero data. Chances are your school library does as well. Let’s start with Amazon, though. Go here. Now look at the address bar. There should be a little folder icon there. If you click on that, it will bring up all the books on the current page, from which you can select which to add to Zotero. Now go here. Just one book this time, and the Zotero icon in the address bar is now a book. Click on it and it will add the bibliographic data to your database.

A lot of blogs also support Zotero, including this one. See the icon in the address bar when you go to nerdlets.org? That means you can add blog entries straight into your Zotero database.

zotero bar

Play around for a bit. Try Google books. Or the library of congress. Or your favorite library site. Also notice the various icons in the middle section of your Zotero interface. These all allow you to add a variety of things to Zotero, from webpage snapshots, to manual data for books that are not on your preferred website, to files on your computer.

Step 4: Using Zotero with your Word Processor

Install Word Processor Plugins. Now that you have some data you probably want to use it. Zotero has a number of plugins that integrate with your favorite word processor. You can find out more about those here, and the install page is here. Make sure you scroll down for the 2.0 plugins; the 1.0 plugins will not work. The plugins install just like Zotero itself, as browser add-ins. The plugins update automatically, and automatically install all the needed files into your word-processor. Easy. There is one for Microsoft Word (here) and for OpenOffice (here).

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Format your citations in the correct style. Now Zotero will work with your word processor, adding data into footnotes as needed, and all in the proper format. Speaking of proper format, you may want to add bibliographic styles not included by default. For theology or church history you’ll probably want to use what Zotero calls “Chicago Manual of Style (Full Note with Bibliography),” which is included by default. For biblical studies you’ll probably want the SBL style, which is not installed by default, but fear not! Because Zotero is open source anyone can create their own style, and a number of users have done just that. Most likely your preferred style is out there somewhere. Let’s install the SBL Style as an example. Go to Zotero preferences and click on the “Styles” tab. Then click on “Get additional styles…” This will take you to a webpage with a whole list of styles; just click “install” to add it to Zotero. The SBL style guide is in that list, or you can install that by clicking here.

Back in the preferences dialog click on the “Export” tab. Select the style you prefer in the “Default Output Format” box.

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Cite, my friend, cite! Now open up your favorite word processor. I’m using OpenOffice, but the process is the same for Word. You should notice a new toolbar. If you don’t see it, go to “View” and “Toolbars” and look for one that says Zotero. Once you find it, hover over each button to see what they do.

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Let’s assume you want to add a citation that is SBL compliant. Create a footnote. Now add a citation (“1″ in the picture). If this is the first Zotero citation you have added a window will pop up asking about how you want to format this document. Make sure SBL is selected and click OK. You will notice that a field has been added to your footnote (2), and a new dialog window has popped up (3). Now search for a citation you want to add, either by browsing through folders or by using the search dialog (4). Select your citation (5), and add page numbers (6). You can also choose “Multiple Citations” if necessary (7). When you’re done click OK (8).

Once you are done with your document you can automatically generate a bibliography (3rd button). You can edit citations with the second button. Have fun!

Step 5: Helpful Hints and Best Practices

Zotero is pretty powerful software, but you have probably already encountered some problems. Here are a few tips on how to use Zotero effectively.

  1. Use folders sparingly, use tags generously. Folders are a great way of organizing information, provided you don’t have too many and the hierarchy doesn’t go too deep. I create folders for each major topic that I am studying. Every paper I write or class I teach gets a folder. This allows me to have a kind of record of research. But if you get to specific this can get unwieldy. Instead, use tags for the specifics. Tags are search-able and non-hierarchical. You can add as many as you want and it won’t junk up your database.
  2. Every paper your write gets its own folder. Again, this allows you to retain a record of research. Anything you cite in a paper goes in that folder.
  3. Stick to a standardized naming scheme for authors and publishers. One of the major problems with Zotero is that it does not store author and publisher names in a hierarchy. So if you add Calvin’s Institutes under “Calvin, J.” and then later one of his commentaries under “Calvin, John,” Zotero will think it is two different authors, which will mess up your bibliography. Rather than making lots of piddly changes down the road, stick to a standardized naming scheme now. Make it work with whatever bibliographic style you are using. For authors I stick to last name and 1-2 initials. For publishers I always exclude the words “Publishing” or “Press” unless its a university (“Oxford University Press”). If the book contains a number of articles, I always have a separate entry for the book as a whole, then “copies” of that entry for various articles. Find a system that works for you and stick with it.
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  5. Always type out quotes you want to use in Zotero first, then copy and paste into your article. I like to do research “on the fly”; that is, I like to research as I write, and write as I research. This means that my papers are always in process. It also could mean that my research is less easily reusable. In order to find that quote I need to find that paper in which I typed it out. To avoid this, type out all quotes as notes in Zotero. Right click on the book from which the quote is taken and select “Add note.” On the top line type two or so words that identify the topic of the quotes (think: “how will I search for this in two years”) and the page number. Then type out the quote (Zotero has a handy “quote” style), then any comments you might have. Notes like this will always be associated with their respective books, no matter where you drag and drop that book, and notes can be tagged like anything else.

Step 7: Syncing Zotero

The latest version of Zotero allows you to sync multiple databases, and also sync online. To set that up, follow the directions here. That will allow you to sync your data. To sync files—like all those PDFs you have saved—things get more complicated, but all is explained in the aforementioned link.

Please remember, though, that SYNC does not mean BACKUP. Sync means that everything you do is synced between multiple computers. If you do something idiotic, your idiocy will then be replicated 10 fold. A mirror doesn’t make your face any less dirty. You still need a backup, so keep reading.

Step 8: Securing your Life’s Work

I now use Zotero as my bibliographic database, as a document library for all my PDFs, as a web bookmarking database, a recipe book, an interview manager, and a job-search tool. If it fails, I’m sunk. You need to back up your Zotero database. How do you do that?

Zotero is just a collection of files. Place your Zotero directory somewhere that gets backed up every day, like your My Documents folder (see above for how to do this). Better yet, use Dropbox. Dropbox is an application that you can install that creates a folder, and then automatically backs-up and syncs any data you put into it. Dropbox is free, works on any OS, and provides you with 2gb of storage. You can install it by going here. Once you have your dropbox folder up and running, move your Zotero folder into it.

You should also have a local backup. That is, every night your computer should back up all important data onto a separate hard disk. By an external harddrive (newegg.com) and backup your data to it daily (using something like the free version of syncback.

Conclusion

When your research is searchable, re-usable, and secure, life is good.

 
Windows Internet Explorer
Image via Wikipedia

Now don’t get me wrong, I still think everyone should be using Firefox as their default web-browser. But I’m a realist, and sometimes you just need Microsoft’s Internet Explorer (IE). And if you’re going to use Microsoft, then you should really definitely immediately download IE8, released today at noon.

There are a whole host of reasons to do this—security, speed, eye-candy, convenience, lots of new features—but the most important reason is to support Microsoft in their new not-evil policies. For the first time ever Internet Explorer will be standards-compliant by default. This is good news for browsers, programmers, and Microsoft; it will truly change the web be ensuring that every web page is viewable regardless of Operating System or Browser.

So if you’re running Windows, download today. You’ll be glad you did, and you will be doing something good for all of us!

In the interest of full-disclosure, I should mention that viewing this site in IE7 results in a couple of formatting problems (with 3rd-party widgets and things), but IE8 displays everything perfectly. This is because IE8 is now standards-compliant! Thanks Microsoft!

 

It’s been a long time coming, but SBL has finally released their promised Greek Font. The download page is here, or you can download it directly here. There is also a Hebrew font.

The fonts work in all Operating Systems (Windows, Linux, Mac). They are not open-source (so a couple of other fonts are still my top recommendations), but they are free to use:

SBL fonts are made available without cost to individual scholars for non-profit use. Commercial use by publishers is reserved for members of the SBL Font Foundation.

If you haven’t already set up your keyboard to support Unicode Greek, follow my guide (for Macs go here, or for Linux here).

SBL’s Biblical Font FAQ is also worth a read. If you’re not already familiar with the advantages of Unicode (as described, for example, in my guide), you may find their explanation of interest:

Why should I bother with a Unicode font? Isn’t it easier to keep using the fonts I have used for years?

With older, non-Unicode fonts, character glyphs were simply mapped over Roman characters. So, with SPEzra for example, pushing “b” displays a bet, and “[” displays an ayin. However, the computer understands these characters as “b” and “[.” Thus, when the document is transferred to a computer that does not have that specific font installed, the computer displays those characters.

Unicode seeks to allow for transfer of encoded documents between platforms and independent of fonts. So, if a document is typed using one Unicode font, it will also be viewable using another Unicode font. Likewise if the font is not installed, the computer simply defaults to its normal Unicode font. If one wants to use a different font for aesthetic (or other) reasons, one can change the font just like one would do with English. Additionally, the computer understands the characters to be the ones that the screen displays. So, an ayin both displays as an ayin and is encoded that way. This makes cross-platform text transfers and searches possible, because texts can be encoded with the characters in which they are written. Even though learning to switch to and use keyboard layouts for other languages takes a little bit of time to learn, the benefits of Unicode more than make up for this small initial investment of time and effort.

HT: Rod Decker

 

MSOpenOffice.org LogoSome good news from Microsoft: Office 14 and the next Service Pack for Office 2007 will natively support the OpenDocument format (ODF) used by such software as OpenOffice.org and Google Docs. This open-source format has been adopted as a standard by recognized computing organizations and governments worldwide, succeededing to gain support in many areas that Microsoft’s OpenXML format has failed, which has put pressure on MS to respond with a similarly “open” format.

Cnet reports:

For a company that is happy to list a million reasons why Office is better than OpenOffice or Google Docs or other rivals, Microsoft sure is putting a tremendous amount of effort into working better with those products.

The next version of Office will natively support the OpenDocument format (as will the next service pack for Office 2007). As it is developing the next Office, Microsoft is also documenting every change it is making as part of its commitment to documenting all of Office’s various formats and protocols.

For those unable or unwilling to wait, you can download a plugin for MS Office that will add ODF support now. There is one from Sun (which I am given to understand is the version to be included in Office 2007 SP2 and later) or from the OpenOffice community.

 

PDF

Paper isn’t going away, of course, but having all your documents on such an antiquated medium is often less than ideal. There is at least one major disadvantage to paper: searching is much more difficult. That’s just one of the reasons PDFs are so popular! Anybody can open a PDF file for free, search it for the information they need, and store it for later browsing without any significant impact on harddrive space.

Not all PDFs are Created Equal

But perhaps you don’t know that there are two kinds of PDFs. The best kind of PDF is the kind generated by computer software from a text file. These PDFs are searchable because the text is preserved.

But many PDFs are generated from images rather than text. If you create a PDF by scanning a document in a photocopier or image scanner then the result is usually an image-based PDF, rather than a text-based PDF. This means that your PDF will not be searchable because you computer does not have access to the underlying text, even though you can read it just fine.

Searching any PDF with OCR

So how can you overcome this difficulty? By using Optical Recognition (OCR) software. OCR tools look at the image and try to convert it to plain text, which can then be searched, copy-and-pasted, and indexed just like any other document (I worked with several such software systems during my undergraduate degree).

There are several good free OCR tools available for converting PDF documents to plain text. The best out there is that used by Google, which powers its Google Books services. The problem here is that you don’t have direct access to their software. You need to go fishing and wait for Google to bite. You can find instructions for doing that here.

If you want more control over your software, and you probably do, check out this list of handy PDF tools, many of which are OCR converters. There is also a lot of great software on this list.

Finally a new service, PDF-to-word, currently in invite-only Beta, accurately converts PDF images to MS Word documents. You might have to just bookmark this one since it’s not yet available to the public, but you might find an invite code online, such as here.

Conclusions

One remaining limitation of all this is that the OCR software listed above is optimized for English. Problems often occur with German and French, and don’t even bother trying it on Greek or Hebrew. Nevertheless the advantages for English scanned images are worth investing some time experimenting with one of these systems, especially if you have a lot of scanned PDF documents.

 

File:IPod Touch 2.0.png

The best kind of multitasking system is the one available to you anytime and anywhere. In today’s electronic world, that often requires having access to your files. What articles do you need to read? Or maybe you have some sermons or lectures you’d like to listen to? Regardless of your specific needs, if for whatever reason you want access to certain files (documents, music, etc.) on the go, there are several options available to iPhone owners.

Drop.io

The excellent and free web service drop.io is frequently mentioned on this blog. It is an easy way to securely share larger files with friends and colleges. But it can also be an excellent capture tool for storing ideas and tasks (read my guide to that here).

Either way, drop.io is now available on the iPhone, which means its usefulness has dramatically increased (for those lucky enough to have an iPhone, which I am not). You can find the app on the iTunes store here.

ZumoDrive

ZumoDrive allows you to access on online storage drive just like you would a hard-drive on your computer. It’s fast and it doesn’t take up any space on your computer or on your iPhone, which means you can keep a whole lot of information there without worrying about filling up your iPhone’s hard-drive. ZumoDrive gives you 1gb for free, and charges $2.99/month for 10gb. For a full review, check out this article.

Soonr

Another web-based storage service, Soonr, allows you to view and edit your documents online. Check out the details here.

Conclusion

All in all there are a lot of options available to those who need access to important files on-the-go. Of course, the options listed here are only available to those with an iPhone. In the interest of full disclosure, I don’t have one, and so cannot comment on these based on personal experience. Perhaps the fabled Google Drive will bring mobile cloud storage to the rest of us, and there is always Dropbox (any OS) or Microsoft for (Windows only) if you usually have a notebook or netbook on your person. Regardless, this is the future of multitask computing, so if there is an option available to you, consider setting it up now! You won’t regret it!

 

I can’t believe it either, but it appears to be true: Microsoft is giving stuff away for free. Here’s the scoop.

 

Lifehacker recently announced that Microsoft has made available the first release candidate of Internet Explorer 8. While I’m still not moving away from Firefox, I am excited about this new release. I have been using the IE8 Betas for awhile now and am impressed—it is definitely a step in the right direction, if only because MS has promised that IE will finally be standards-compliant (why this has taken over a decade, who can know).

The Lifehacker post includes links to the download and to a description of IE8′s new features.

 

As a follow-up to my Westminster Bookstore Search Plugin I have created a similar plugin for the Westminster Seminary Library, which works in both Firefox and IE7. So now you can search Westminster Seminary’s library right from your browser, and since the site natively supports Zotero, this makes research all that much easier.

Add the Westminster Library to your search bar

Add the Westminster Library to your search bar

Installing

The same instructions for installing the Westminster Bookstore plugin apply here as well. For Firefox and IE, while viewing this post just click on the search engine toolbar in your browser and select “Add the Westminster Library.” For Google Chrome go here and click on “Westminster Library,” which should open a dialog box. Leave everything as is, unless you want to change to the keyword to something simpler (like “wl”), which will allow you to just type the keyword in the URL bar, then tab, then your search. The plugin is also available directly from the Westminster Library site.

Updates

Consider this the official page of this little plugin. Updates will be posted here, so you may want to bookmark this post. Please post any comments, suggestions, or problems in the comments section and I will respond as soon as possible.

If you want to make this search feature even more powerful, follow this guide. There is also a Ubiquity command available.

As a side note, the plugin supports advanced boolean syntax. Typing “stott romans” into your search will return all results with both “stott” and “romans” that occur in any field. By contrast, “a:(stott) romans” will search for any books whose author is “stott” and also have the word “romans” in any other field. Similar results will occur with t:(“title”) or s:(“subject”). For more syntax suggestions, just search the Westminster Library Catalog and pay attention to how it formats your queries.

Update: This plugin is now official. In addition to accessing it here, it is now available from the Westminster Library Catalog.

 

The New York times recently covered the increasing popularity of Ubuntu’s flavor of GNU/Linux, attributing much of its success to Mark Shuttleworth’s leadership and wealth.

There’s a lot of sensationalism in the article. Like this:

But rather than preparing to code for the highest bidder, the developers were coordinating their largely volunteer effort to try to undermine Microsoft’s Windows operating system for PCs, which generated close to $17 billion in sales last year.

I don’t think Linux coders are all that subversive—we just want more control over our software. But still, it’s nice to see Linux getting some mainstream attention.

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