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Zotero is free bibliographic software that allows you to easily collect, annotate, and cite bibliographic data. It runs as a plugin for the excellent Firefox browser, which means that you have the web at your fingertips as kyou manage information, and also that it can run on any operating system that Firefox can run on (that is, all of them). It is also open-source, which means that anyone can improve it and develop for it. It is a great alternative to more expensive software, and also has a number of advantages over its more wealthy brethren.

This is a guide to using Zotero effectively in biblical studies, though using Zotero effectively in biblical studies is usually similar to using Zotero effectively in other fields. I will add a couple of remarks along the way, however, especially for those of us in theological fields.

Step 1: Installing Zotero

Your first step in using Zotero is getting everything installed. If you are not already running Firefox (an excellent open-source web-browser), then shame on you. Install that by following the easy steps here.

Installing Zotero

Open up Firefox and browse to the Zotero site (here). Click on “try out 2.0 beta.” It might seem at first that 1.0 is the better option, but there are SO many new features with 2.0 that it’s really the way to go. I use Zotero daily and have had no major issues with 2.0. The rest of the guide will assume that you are running that version.

Once you click, Firefox will do the rest—download, install, and ask you to restart. Restart Firfox and you are ready to go.

The Zotero website is also a great place for guides and videos, so browse around a bit.

Step 2: Move Your Zotero Directory

The VERY FIRST thing you need to do with your new Zotero setup is change the location where it stores all its data. By default Zotero puts all the information you want it to remember in the same place where all your Firefox settings are stored. This is terrible. It’s like storing your valuables in something that looks exactly like a trash can—someone will eventually forget it’s not a trashcan and throw it away. You’ll either upgrade Firefox, or Windows, or something, and then it will be gone (and backup software may not know to back up this directory). So let’s move it. (Note: if you already have data in your Zotero directory, back it up first using Zotero’s export command. When you move your directory in Zotero it will seem like your data is gone, but it isn’t. It’s still in the old directory. Either move it manually or import the data you just exported).

Create a New Folder. Open up your file browser and go to a directory where you keep important data. Something like “My Documents” in Windows—you know, where you save documents. Hopefully it is also a directory that gets backed-up by your backup software. In that directory create a new (empty) directory called “Zotero.” (For an always-on backup solution that super-secures your data, you may want to put Zotero in a Dropbox directory; see “Securing Zotero” below).

zotero window
data directory

Tell Zotero what to do. Now in Firefox you will now notice an icon in the bottom right corner that says “Zotero” (labeled “1″ in the picture to the right). Click on that to get your Zotero window up. Then look for a gear icon (“2″ in the picture), which you should click, and select “Preferences.” We’re going straight to the “advanced” tab (“1″ in the second picture), then clicking the “Custom” option (2), and then clicking “choose” (3). Select the directory you created and click ”

Step 3: Get Some Data

Alrighty, now that we know our data isn’t going anywhere, let’s get some actual data. You can add books and articles and what not manually, but that is SO 2008. One of the great things about Zotero is that it sits in your web browser, so you can use the web to get data for you. A number of popular sites (Amazon, Google books, etc) support Zotero data. Chances are your school library does as well. Let’s start with Amazon, though. Go here. Now look at the address bar. There should be a little folder icon there. If you click on that, it will bring up all the books on the current page, from which you can select which to add to Zotero. Now go here. Just one book this time, and the Zotero icon in the address bar is now a book. Click on it and it will add the bibliographic data to your database.

A lot of blogs also support Zotero, including this one. See the icon in the address bar when you go to nerdlets.org? That means you can add blog entries straight into your Zotero database.

zotero bar

Play around for a bit. Try Google books. Or the library of congress. Or your favorite library site. Also notice the various icons in the middle section of your Zotero interface. These all allow you to add a variety of things to Zotero, from webpage snapshots, to manual data for books that are not on your preferred website, to files on your computer.

Step 4: Using Zotero with your Word Processor

Install Word Processor Plugins. Now that you have some data you probably want to use it. Zotero has a number of plugins that integrate with your favorite word processor. You can find out more about those here, and the install page is here. Make sure you scroll down for the 2.0 plugins; the 1.0 plugins will not work. The plugins install just like Zotero itself, as browser add-ins. The plugins update automatically, and automatically install all the needed files into your word-processor. Easy. There is one for Microsoft Word (here) and for OpenOffice (here).

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Format your citations in the correct style. Now Zotero will work with your word processor, adding data into footnotes as needed, and all in the proper format. Speaking of proper format, you may want to add bibliographic styles not included by default. For theology or church history you’ll probably want to use what Zotero calls “Chicago Manual of Style (Full Note with Bibliography),” which is included by default. For biblical studies you’ll probably want the SBL style, which is not installed by default, but fear not! Because Zotero is open source anyone can create their own style, and a number of users have done just that. Most likely your preferred style is out there somewhere. Let’s install the SBL Style as an example. Go to Zotero preferences and click on the “Styles” tab. Then click on “Get additional styles…” This will take you to a webpage with a whole list of styles; just click “install” to add it to Zotero. The SBL style guide is in that list, or you can install that by clicking here.

Back in the preferences dialog click on the “Export” tab. Select the style you prefer in the “Default Output Format” box.

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Cite, my friend, cite! Now open up your favorite word processor. I’m using OpenOffice, but the process is the same for Word. You should notice a new toolbar. If you don’t see it, go to “View” and “Toolbars” and look for one that says Zotero. Once you find it, hover over each button to see what they do.

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Let’s assume you want to add a citation that is SBL compliant. Create a footnote. Now add a citation (“1″ in the picture). If this is the first Zotero citation you have added a window will pop up asking about how you want to format this document. Make sure SBL is selected and click OK. You will notice that a field has been added to your footnote (2), and a new dialog window has popped up (3). Now search for a citation you want to add, either by browsing through folders or by using the search dialog (4). Select your citation (5), and add page numbers (6). You can also choose “Multiple Citations” if necessary (7). When you’re done click OK (8).

Once you are done with your document you can automatically generate a bibliography (3rd button). You can edit citations with the second button. Have fun!

Step 5: Helpful Hints and Best Practices

Zotero is pretty powerful software, but you have probably already encountered some problems. Here are a few tips on how to use Zotero effectively.

  1. Use folders sparingly, use tags generously. Folders are a great way of organizing information, provided you don’t have too many and the hierarchy doesn’t go too deep. I create folders for each major topic that I am studying. Every paper I write or class I teach gets a folder. This allows me to have a kind of record of research. But if you get to specific this can get unwieldy. Instead, use tags for the specifics. Tags are search-able and non-hierarchical. You can add as many as you want and it won’t junk up your database.
  2. Every paper your write gets its own folder. Again, this allows you to retain a record of research. Anything you cite in a paper goes in that folder.
  3. Stick to a standardized naming scheme for authors and publishers. One of the major problems with Zotero is that it does not store author and publisher names in a hierarchy. So if you add Calvin’s Institutes under “Calvin, J.” and then later one of his commentaries under “Calvin, John,” Zotero will think it is two different authors, which will mess up your bibliography. Rather than making lots of piddly changes down the road, stick to a standardized naming scheme now. Make it work with whatever bibliographic style you are using. For authors I stick to last name and 1-2 initials. For publishers I always exclude the words “Publishing” or “Press” unless its a university (“Oxford University Press”). If the book contains a number of articles, I always have a separate entry for the book as a whole, then “copies” of that entry for various articles. Find a system that works for you and stick with it.
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  5. Always type out quotes you want to use in Zotero first, then copy and paste into your article. I like to do research “on the fly”; that is, I like to research as I write, and write as I research. This means that my papers are always in process. It also could mean that my research is less easily reusable. In order to find that quote I need to find that paper in which I typed it out. To avoid this, type out all quotes as notes in Zotero. Right click on the book from which the quote is taken and select “Add note.” On the top line type two or so words that identify the topic of the quotes (think: “how will I search for this in two years”) and the page number. Then type out the quote (Zotero has a handy “quote” style), then any comments you might have. Notes like this will always be associated with their respective books, no matter where you drag and drop that book, and notes can be tagged like anything else.

Step 7: Syncing Zotero

The latest version of Zotero allows you to sync multiple databases, and also sync online. To set that up, follow the directions here. That will allow you to sync your data. To sync files—like all those PDFs you have saved—things get more complicated, but all is explained in the aforementioned link.

Please remember, though, that SYNC does not mean BACKUP. Sync means that everything you do is synced between multiple computers. If you do something idiotic, your idiocy will then be replicated 10 fold. A mirror doesn’t make your face any less dirty. You still need a backup, so keep reading.

Step 8: Securing your Life’s Work

I now use Zotero as my bibliographic database, as a document library for all my PDFs, as a web bookmarking database, a recipe book, an interview manager, and a job-search tool. If it fails, I’m sunk. You need to back up your Zotero database. How do you do that?

Zotero is just a collection of files. Place your Zotero directory somewhere that gets backed up every day, like your My Documents folder (see above for how to do this). Better yet, use Dropbox. Dropbox is an application that you can install that creates a folder, and then automatically backs-up and syncs any data you put into it. Dropbox is free, works on any OS, and provides you with 2gb of storage. You can install it by going here. Once you have your dropbox folder up and running, move your Zotero folder into it.

You should also have a local backup. That is, every night your computer should back up all important data onto a separate hard disk. By an external harddrive (newegg.com) and backup your data to it daily (using something like the free version of syncback.

Conclusion

When your research is searchable, re-usable, and secure, life is good.

 

I often find it helpful to have a Bible Atlas near me when I’m reading through large chunks of the Bible. I have been unable to find a real good online version, but here is a pretty decent offering from the Access Foundation. It is listed on Scribd as licensed under the Creative Commons non-Commercial Attribution license.

Bible Atlas

 

bible-search-barIn addition to their excellent reftagger plugin, which provides blog readers with Bible verse popups whenever they hover over a Biblical reference (try it with Heb. 1:1), Bible.Logos.com is now offering a free Bible Search Bar widget to put in your sidebar. Biblical Bloggers should definitely look into this as it makes things easier for your readers. Logos explains:

If you have biblical content on your website or blog, you’ll definitely want to consider adding the new Bible Search Bar to your sidebar. RefTagger allows your readers to have instant access to the Bible passages that you cite in your post, but what if they want to look up a verse that you don’t mention or launch a search for a word or phrase that you discuss? They could manually navigate to Bible.Logos.com, but the Bible Search Bar makes it even easier for your readers to find what they’re looking for.

The sidebar add-in comes in many shapes and sizes, and should be a convenient addition to any biblical blog. You can get it here. And don’t forget reftagger, if you don’t have it installed already, here.

 
wifi tshirt

In today’s troubled times, it’s a wonder that so many strange ideas can survive. Today’s Strangelet: a T-shirt that notifies you of adjacent Wi-Fi networks. From DigitalInspiration:

The wi-fi shirt, made of pure cotton, can detect wireless networks in your vicinity and displays the signal strength as animated glowing bars as shown in the picture.

It requires three AAA batteries, so this shirt is not for jogging.

Want proof? Doubt the usefulness of such a Tee Shirt? Watch the video!


Nicole Lapin Shows Off Her Wifi T-ShirtClick here for another funny movie.

 

Who needs Google when you’ve got the Westminster Bookstore, right? Well now you can add that famed repository of Reformed Christian resources right into your Browser search bar.

It's now easier than ever to search your favorite Reformed bookstore!

It's now easier than ever to search your favorite Reformed bookstore!

How? Easy. If you are viewing this page (and my guess is you are), just click on the search engine toolbar in your browser and select “Add the Westminster Bookstore.” Still confused? Just check the picture to the right. This plugin works in Firefox, Internet Explorer 7, and several other popular browsers.

Consider this the official page of this little plugin. Updates will be posted here, so you may want to bookmark this post. Please post any comments, suggestions, or problems in the comments section and I will respond as soon as possible.

If you like what you see, you may be interested in my ubquity command for the Westminster Bookstore.

This blog exists to promote and describe tools and technologies that might be of interest to Christians. If you are interested in such things, why not subscribe to my blog.

 

Though I’ve mentioned it several times, it’s worth repeating: the Internet Archive is a truly wonderful resource. It contains a wide variety of legal downloads in the open domain. I’m currently reading a little Origen (disseration work) while listening to recent Béla Fleck Christmas Concerts.

For the latter below, go here or here, or just listen below.

 

Google Calendar now syncs with Apple’s iCal, Mozilla’s Sunbird, or Thunderbird (with the Lightning extension) without any additional plugins or even all that much work. Follow these instructions.

Google Calendar with one of these applications provides the perfect online/offline solution to scheduling. Individuals and organizations alike can benifit from this.

 

The following is a set of links that will be useful for those trying to set up Zotero on their computers. (Not sure what Zotero is or why you would want it? Check out their site, and don’t miss the demo video).

Initial Setup

  1. Firefox Web Browser. Zotero runs as a plugin within this excellent browser.
  2. The Zotero Plugin. There are two options here. Pick one of the following:
    • Zotero 2.0 Beta (recommended). This is the latest release. It is Beta software, which means you may experience bugs. But I have been using this release for sometime and have not experienced any problems. There are several advantages of this release: online syncing (though see below), rich-text editor, more functionality. Create an account online to store your Zotero database here.
    • Zotero Version 1.0. This is the “safe” option, but you loose some functionality, and I have not had any problems with the “cutting-edge” version above. This version will be upgraded soon, so whichever option you pick will be fine in the long term.

Learning Zotero

  1. Demo Video
  2. Tour of Features
  3. Quick Start Guide
  4. Dan Cohen’s Blog often has good Zotero-related news
  5. As does my blog.

Extending Zotero

  1. Plugins for Microsoft Word or OpenOffice
    • If you chose the Beta version, go here and follow the instructions.
    • This now runs as a browser plugin, which installs the Word Processor integration utility automatically. Smooth and easy.

    • If you downloaded the regular 1.0 version, go here and follow the instructions.
  2. Customized Bibliography Styles. Zotero comes with a wide variety of default styles, including Chicago. But if there is a specific style that you need, check out this link to see if it is available. Researchers in Biblical Studies might be particularly interested in the SBL Style. Just click and Zotero will install everything for you.

Securing Zotero

  1. Use the Sync Preview release (above). It will securely back up and sync all your information and notes online, which can be accessed here. It does not backup stored files or PDFs, however; only text.
  2. If you are computer savvy, you can set up a WebDAV server to store and sync your entire Zotero database. This is like option (1) but also stores PDFs and other files. Check out this forum for suggestions.
  3. Use Dropbox. This is the best possible solution. Install Dropbox and then open your Zotero preferences dialog. Go to the Advanced tab, then place your Zotero database in a custom location: your “My Dropbox” folder. Now anytime a change is made the Dropbox software will upload it in real-time. You can also use this to sync your Zotero database accross multiple computers, and it includes all your files (movies, PDFs, images, etc). Your data is encrypted on Dropbox’s servers, so you don’t have to worry about security concerns.
  • Update: I should mention one issue I have had with the Dropbox solution. Dropbox cannot save open files, which means it will not upload or download your Zotero database until you close Firefox. If you are syncing your Zotero database across two computers, be aware of this limitation. Make sure you close Firefox on both computers, and that Dropbox has finished syncing all the data, before you switch workstations. Dropbox does save conflicting copies of files, so your data should ultimately be safe, but it may be a lot of work to recover it.

Update: This post was modified from the original on Sept. 17 2009 to bring it in line with the current status of the Zotero project.

 

There is now an easy way to sync your Thunderbird addresses and calendars with, well, anything!

Our family uses Mozilla’s Thunderbird to get things done–it syncs up perfectly with Gmail (use IMAP for best results) and Google Calendar (with this plugin). The only persistent problem I have had is getting all our address books to sync across computers (not to mention cell phones, music players, etc). Until last night.

A wonderful sync web-based service called Funambol uses data standards to keep all your address books (and calendars) in sync. It even works across different software, and will sync with your iPhone or Blackberry or other smartphone. It’s free and open source.

First download the Thunderbird plugin. It’s experimental (so you will need to sign into Mozilla and tell them you’re cool), but I have had not problems. You also need a Funambol account (get one here). You may also be interested in a number of other plugins a plugins for Outlook and other applications.  Give it a whirl!

 

Some time ago I posted this introduction to free software, promising a series of articles about good free products available for all your computing needs. The promised posts have been slow in coming, but the next in the series is ready for release! You can find other posts in this series here.

This post will lost a couple of free alternatives to popular media players, such as Windows Media Player and iTunes.

Free vs. Free

Of course, WMP and iTunes are both free, aren’t they. Yes they are in the sense you don’t have to pay for them. But both are tightly controlled by companies that want to sell you there products, and there is therefore a cost attached. WMP, for example, requires you to buy a license for DVD playback. You probably didn’t know this since the cost of the license is embedded in your Windows installation, but it’s true. If you’ve ever had to re-install Windows, only to find that DVDs no longer play, you propbably had occasion to learn this. iTunes also has its problems (what software doesn’t), but prime among them is DRM. When you buy Music off of iTunes it is protected in such a way that it only plays on products you own. This is fine, most of the time, but what if the store in question stops supporting your music? Or what if you want to play your music on another product? Bottom line: it’s still their music!

Really Free Media Players

So here are a couple of selections if you want alternatives to iTunes or WMP.

  1. VLC Media Player. This little guy plays every media type imaginable: DVDs (out-of-the-box), mpegs, windows media, mp3s, etc. Let’s put it this way: I never encountered a format that it can’t play. This should be on your computer, if only to be able to play anything you want to. But in addition, VLC offers powerful conversion tools and other handy features, making it an all-in-one media management solution. Want to play a file that a friend sent you that’s in same weird format? Try VLC. Want to convert a DVD so it will run on your iPod? VLC can do that too! Want to setup a server to stream music to your friends on your own personal internet radio station? Well, you get the idea. One disadvantage: VLC lacks a good media library, so it won’t be your default music player.
  2. Songbird (get the 1.0 release here). Songbird can be your all around iTunes replacement. Simple, pretty, with lots of plugins to help you get it running just the way you want. I’ve been using it for awhile, and since it is now out of Beta it is ready for the masses. It’s based off of Firefox, with all the advantages of a built-in web browser, infinite plugins, and open-source code. Great for the iTunes user, and it runs on Windows, Mac, and Linux. Interested? Check out this review.
  3. Foobar2000. An excellent Music player and media manager, especially for the advanced user who knows what words like FLAC, ogg, and bit-perfect mean. It has plugins for almost everything, including your ipod. It’s not the prettiest (though recent versions are much improved), but it does everything, including rip your CDs with double-check for accuracy and automatic replay-gain scanning! It is a Windows app, but runs on Linux perfectly using WINE.
  4. Others: There are a couple of other media players that those comfortable with experimenting can take a look at. First, Amarok, which runs on Linux and apparently on Windows (though I have not gotten the latter to work). Winamp is also popular, though I haven’t used it in years.

Other Free Media Tools

The software above is great for playing videos or music, but you might also need tools to manage your files. Here are some that I use.

  1. Handbrake. All-in-one video converter. Allows you to convert one video format to another, with a special emphasis on easily turning DVDs into iPod videos. You can find other media converters, including some that circumvent copy protection, here.
  2. Orb. Share your music with your friends.
  3. CDBurnerXP. An all-in-one CD, DVD, and Blu-Ray burner. A simple tool for what should be an easy job.
  4. Other video tools: check out this post for more converters.
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